Galaxy Erasmus MC
The homepage of the Erasmus MC Galaxy community
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- manage data by sharing and publishing results, workflows, and visualizations.
- ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
News
usegalaxy.eu closes job-queue on February 14th to support climate strike
SPOC HDR UK ELIXIR-UK CoFest 2025: How did it go?
We held our second 🖖🏾SPOC CoFest, in the great tradition of the excellent CoFests organised in the GTN that welcomed @gtn:nomadscientist and many others into the community.
CellxGene-VIP scRNA-seq, spatial transcriptomics, and multiome data visualization
CELLxGENE-VIP is a frontend plugin of CELLxGENE, enabling users to generate multiple QC plots in high-resolution SVG or PNG format. It can also visualize spatial transcriptomics and 10X multiome.
TabPFN: Foundation Model for Tabular Data in Galaxy
Fast machine learning method for making predictions on any tabular data
Check out the newest features and updates on Galaxy!
Events
Feb 27Research Data Management with RSpace and Galaxy - Talk and Q&A
Discover how RSpace's open-source solutions promote innovation and collaboration in research data management (RDM).
Mar 10 - Mar 14Workshop on high-throughput sequencing data analysis with Galaxy
This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.
Mar 12 - Mar 14E-Science-Tage 2025
The E-Science-Tage is an interdisciplinary conference series on research data management and open science. The Freiburg Galaxy team will present a poster on Galaxy's applicability in the humanities and offer a workshop.
FTP Upload
For large files, FTP upload is also available on this server. Connect to port 23 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.
As an example, a screenshot of the configuration settings for FileZilla can be found here.
Training
We regularly provide workshops.
But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.
Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!
Our team
This Galaxy is maintained by the Bioinformatics group of the department of Pathology.
For any questions regarding this Galaxy server, please contact us.