Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

News

Exploring data from BERD Data Portal with Galaxy

Find out how to explore your Data from the NFDI BERD Data Portal directly in Galaxy

JupyterGIS: Collaborative Geospatial Analysis in the Cloud

Explore how JupyterGIS supports collaborative geospatial analysis in climate adaptation research.

Galaxy Workshop for Humanities and Social Sciences in Freiburg

Introducing Galaxy and Digital Humanities on site

Vizgen Postprocessing Tool (VPT) now available in Galaxy

Reprocess and refine the single-cell results of MERSCOPE experiments

Genome Assembly and Annotation Training using Galaxy and TIaaS

Using the Galaxy infrastructure and workflows to teach de-novo genome assembly and annotation

Events

Jun 5Single-cell & sPatial Omics Community Meeting: 🖖🏾SPOC

Jun 10 - Jun 16Mycobacterium tuberculosis complex NGS made easy

These series of webinars and tutorials aim at improving basic and applied knowledge associated with NGS technologies and their applications in the field of Tuberculosis.

Jun 19Small Scale Galaxy Admins Meeting

Jun 23 - Jun 26Galaxy and Bioconductor Community Conference

Get ready for the first-ever Galaxy and Bioconductor Community Conference (GBCC 2025)! Join us in New York for an unforgettable event packed with cutting-edge bioinformatics workshops, inspiring keynotes, and amazing networking opportunities.

Jun 30 - Jul 4From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy

This course introduces scientists to the data analysis platform Galaxy

FTP Upload

For large files, FTP upload is also available on this server. Connect to port 23 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.

As an example, a screenshot of the configuration settings for FileZilla can be found here.

Training

We regularly provide workshops.

But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.

Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!

Visit the Training Material View Publication

Galaxy training materials page

Our team

This Galaxy is maintained by the Bioinformatics group of the department of Pathology.

For any questions regarding this Galaxy server, please contact us.

Visit the team page