Galaxy Erasmus MC
The homepage of the Erasmus MC Galaxy community
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- manage data by sharing and publishing results, workflows, and visualizations.
- ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
News
See what's new on Galaxy with the 24.1 release notes!
The 2024 Galaxy Community Update Paper is Here!
Discover the latest advancements and future directions of the Galaxy Project in the community's newly published 2024 update paper.
Galaxy in Research: Decoding chromatin interactions with asteRIa
Find out how Galaxy helps researchers unlock the mysteries of gene expression regulation through chromatin studies.
All GTN training data are now automatically mirrored via Onedata
As part of the EuroScienceGateway and in cooperation with Onedata and EGI we are providing all GTN training data on a publicly accessible cloud storage
Galaxy in Research: Investigating Food Safety Threats
Learn how Galaxy can be used to detect and analyze drug-resistant bacteria threatening food safety in Egypt.
Events
Jun 24 - Jun 292024 Galaxy Community Conference (GCC2024)
The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.
Jul 22 - Jul 26Workshop on high-throughput sequencing data analysis with Galaxy
This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.
Oct 8 - Oct 10Gateways 2024
Help bridge the connection between science and gateways, such as Galaxy.
Oct 21 - Oct 23EOSC Symposium
EOSC Symposium 2024 invites all EOSC projects. It will take place under the patronage of the German Minister for Education and Research Bettina Stark-Watzinger. The event is being organised by the EOSC Association, the EOSC-A German Mandated Organisation, NFDI, the ZBW – Leibniz Information Centre for Economics, an EOSC-A Member, and with the support of the Horizon Europe project EOSC Focus. The Galaxy Project will join as core pillar of the EU-funded EOSC EuroScienceGateway project.
Nov 13 - Nov 16Biological Data Science
The scope of this meeting will be the infrastructure, software, and algorithms needed to analyze large data sets in biological research.
FTP Upload
For large files, FTP upload is also available on this server. Connect to port 23 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.
As an example, a screenshot of the configuration settings for FileZilla can be found here.
Training
We regularly provide workshops.
But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.
Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!
Our team
This Galaxy is maintained by the Bioinformatics group of the department of Pathology.
For any questions regarding this Galaxy server, please contact us.