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9:00-5:00, July 19-20, 2016
**Kathryn W. Nesbit Classroom #2, Edward G. Miner Library
University of Rochester Medical Center
Instructor: Dave Clements **
Registration
Registration is free and open to any member of the University of Rochester community. Space is available on a first-come, first served basis.
Audience
Are you a life scientist who needs to do complex analysis on large datasets?
Galaxy is an open, web-based platform for data intensive life science research that enables non-bioinformaticians to create, run, tune, and share their own bioinformatic analyses.
Most of the workshop will be hands-on and teach participants how to integrate data, and perform simple and complex analysis within Galaxy. It will also cover data visualization and visual analytics, and how to share and reuse your bioinformatic analyses, all from within Galaxy.
No programming or Linux command line experience is required.
Agenda
The agenda below is tentative and should be considered a work in progress.
Tuesday, July 19
| Time | Topic |
|---|---|
| 9:00 | Welcome Introductions and logistics |
| 9:20 | Basic Analysis with Galaxy Walk through a worked, hands-on example demonstrating basic analysis with Galaxy |
| 10:45 | Break |
| 11:00 | Basic Analysis into Reusable Workflows Genericize our analysis into something we can use again. |
| 12:20 | Lunch (catered) |
| 1:20 | RNA-Seq Example Part I NGS data quality issues and quality control options in Galaxy |
| 2:50 | Break |
| 3:05 | RNA-Seq Example Part II Mapping |
| 5:00 | Done |
Wednesday, July 20
| Time | Topic |
|---|---|
| 9:00 | Welcome Question and Answer from the first day |
| 9:20 | RNA-Seq Example Part III Differential expression |
| 10:45 | Break |
| 11:00 | RNA-Seq Example Part IV Enrichment analysis, and using Galaxy to compare tools |
| 12:20 | Lunch (catered) |
| 1:20 | RNA-Seq Example Part V Splice Junction Identification |
| 2:50 | Break |
| 3:05 | TBD --- |
| 5:00 | Done |
Support
This workshop is generously supported by **
- Center for Integrated Research Computing (CIRC)
- UR Genomics Research Center (GRC)
- Edward G. Miner Library
- UR Research Data Integration and Analytics (RDIA)
- University of Rochester
- National Institutes of Health (NIH)
**
Flier
Please post / distribute the workshop flier to anyone who might be interested.
Slides
Feedback
We will ask for it!
Questions?
Contact John Ashton or Dave Clements.