An ELIXIR Staff Exchange to expand the single cell tools on Galaxy

Design rationale for using the Galaxy platform

We are excited to share a new paper in preprint that shares the latest genome assembly pipeline used by the Vertebrate Genome Project in Galaxy! "

That's a wrap! Catch up on all the highlights from GCC2023 here!

Is Galaxy only useful for genome scientists? Absolutely Not!

Tenth blog post presenting the Outreachy project on Mental Health

Ninth blog post presenting the Outreachy project on Mental Health

How Nextflow pipelines are integrated into Galaxy project at CFSAN, FDA.

Eighth blog post presenting the Outreachy project on Mental Health

Second blog post presenting the Outreachy project on Galaxy Climate

Seventh blog post presenting the Outreachy project on Mental Health

Sixth blog post presenting the Outreachy project on Mental Health

Fifth blog post presenting the Outreachy project on Mental Health

Fourth blog post presenting the Outreachy project on Mental Health

Third blog post presenting the Outreachy project on Mental Health

First blog post presenting the Outreachy project on Galaxy Climate

Second blog post presenting the Outreachy project on Mental Health

First blog post presenting the Outreachy project on Mental Health

From Galaxy dev, Galaxy Climate to Galaxy Well-being and mental health.

Where Galaxy meets in 2022!

The redesigned interface provides access to interactive analysis applications supported by Cloud Environments, i.e. Jupyter Notebook, RStudio and Galaxy

A broad forum for global community updates and discussions

working groups do it better

Transparent, reproducible open computing as a public good

How a "Redo" button enables transparent and open scientific computing.

How to make Galaxy even better

A personal Galaxy instance on the cloud with a fixed monthly cost.

Thank you DaveC

11 years exploring the Galaxy

Some dreams, mixing synchronous and asynchronous workflows in Galaxy and adding high degree of interactivity into Galaxy thanks to R Shiny are ready to be reality

Galaxy Help, together with the different Gitter channels, is one of the primary meeting places where Galaxy users turn to searching for answers.

Tools in Climate Science: Linking Observations with Modelling

There are now better alternatives to using Galaxy on the cloud

The switch to online bioinformatics training forced by the COVID-19 pandemic has opened spaces for collaboration in ways that were previously limited by geography.

Expanding Galaxy’s ability to analyze protected human data

CI-WG Updates from the tertile

Using a specific venv for running on the cluster that is configured on the cluster

Highlights of GCC2021 included talks on Galaxy tools for analysing SARS-CoV-2, the virus that causes COVID-19 and a number of talks on the use of Galaxy in a pathogen genomics and public health context.

Galaxy Australia’s new high memory servers have delivered an impressive leap forward for scientists with large datasets and computationally-intensive analyses.

Galaxy is now available in all flavors of the Terra platform.

From dev to testing to production on the same stack.

"a useful bag of tricks and tools"

A report on the largest Galaxy event ever.

With hundreds of options available to use Galaxy, how do you pick the right one for you?

Parts 1 and 2

On the path toward Galaxy security compliance

Lessons learned

Your own personal Galaxy

Galaxy as a common platform

Bioinformatics online

The Galaxy Publication Library hits a milestone

Meetings In the Time of Coronavirus: Conferences go Viral

The GVL workbench now integrated through data

How BCC2020 went online

Complete analysis on one platform, including training and collaboration

30% faster and single sign-on, ohh my

Everything about Galaxy is Ansible!

Now more reliable, with better security, and with new features.

Galaxy for Ecology, mixing Ecology research, Citizen Science and Massively Multi Online Science

Galaxy is particularly useful for anyone seeking training in multi-omics analyses and creating of workflows.

The arguments are building up for why you need this

Which are dangerously close to the wrong places...

What's happening, right now

What goes into a major lesson update?

Expand your compute horizons.

Get on the cloud, Google Cloud!

New scheduling format this year

Find out about Galaxy's favorite filesystem

QuanTP is a great new gap bridging tool!

A web application for developing Galaxy tools through web interfaces

Citizen Science and Galaxy for Ecology

Hybrid training delivers online participatory training to far-reaching venues, with Galaxy of course

Seeing "Error cloning repository: [Errno 2] No such file or directory"?

Using R Markdown as a framework to develop Galaxy tools

Make your workflows more accessible to non-bioinformaticians

Training using the Galaksio interface

Setup a DigitalOcean droplet with Galaxy, Apache and PostgreSQL

CVMFS and Singularity support

Why not to do assembly on-line?

The Galaxy Publication Library hits a milestone

a new view of the Universe

It needs you

where all the Galaxy tools for Affiniity purification/enrichment MS experiments are located in a form where we all can use them

Working with data programmatically inside Galaxy

a run down of this year's Galaxy Community Conference

UK, UK, UK, and France

How to configure Apache to authenticate a user against an LDAP server that requires authentication to search

Galaxy Series, Volumes 1-12

Secure communication between a Galaxy instance and its users

Focus on the data

A step by step guide

bam.iobio and vcf.iobio can now be launched directly from galaxy using your data already stored there.

For deployment issues, we need a package manager that is operating system and programming language agnostic...

Galaxy CSG flavor

A howto guide on getting data from one instance to another.

Instructions on how to do this ...

A basic guide on how to setup Galaxy with TORQUE in an EC2 instance

a summary of our recent technical developments

Testing the connexion of Galaxy to iRODS object store.

How to generate dataset collections from a Galaxy tool

Explanation of Galaxy's tool dependency definitions that specify how to source the actual packages that implement the tool’s commands

It is pretty simple, though you might hit some obstacles depending on how old your MySQL server is and how much you have manually interfered with the database.

A simple step by step guide on how to use Sebastian Wilzbach’s application, biojs2galaxy.

Outline how I've done this for our local Galaxy set up, which uses nginx.

Using GALAXY_SLOTS with multithreaded Galaxy tools

A HOWTO for installing ANNOVAR in Galaxy

Astronomy, phones, sports teams, chocolate, cars. Not.

Example showing how to install a Java program as a tool in a Galaxy instance

How to implement ProFTPd using PBKFD2 protocol for encryption

GigaGalaxy and “bring your own” data parties

Want to run Galaxy under Bio-Linux 8?

Requires some tweaks in order to allow Galaxy to communicate with the Tool Shed

Tackling irreproducible research

A puppet module for a very basic galaxy server (use for development)

GigaScience moves toward more interactive articles

Make changes to 4 Galaxy configuration files

Documents best practices for tool integration

How to set up IGV-Galaxy integration in Apache and Galaxy, including adding custom genomes

Process for sharing workflows, including wrapping necessary tools

A HOWTO on linking BioServices and Galaxy

eye-wateringly expensive alcohol, brown cheese and reproducible research at the Galaxy Community Conference in Oslo

How to build CloudMan instances from scratch using the CloudBioLinux deployer

XML wrapper and R code

Documents creation of virtual machine ISO image

Python script in CloudBioLinux

A HOWTO guide

The workflow-to-galaxy Ruby Gem