How to use Galaxy

How to cite Galaxy

Citing Galaxy

If you use Galaxy@Pasteur please cite doi:10.7490/f1000research.1114334.1

Cluster Load

test

For pasteur users:

  • Instructions on how to import big data here.
  • Galaxy Initiation slides are available here.
  • If you need a new tool or a new genome index for an existing tool (bwa, blast, star...), send an email to Pasteur_galaxy_support.

Warning! When xml are updated, workflows using them must be adapted.

News

New Publication "Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond"

Flexynesis: bridging multi-omics complexity with transparent AI for Cancer research and beyond

Tabula Sapiens and Tabula Muris Senis Atlases Now Available in Galaxy

Comprehensive Single-Cell Reference Atlases Ready for Import

European Galaxy Days 2025: Many communities, one buzzing week in Freiburg

1–3 Oct 2025, Freiburg: European Galaxy Days, ELIXIR Galaxy, and EuroScienceGateway members convened to align roadmaps and turn plans into solutions, tools, and workflows through talks, demos, and a CoFest.

BRC-analytics is open for business!

From data to publication in a browser with BRC-Analytics: Evolutionary dynamics of coding overlaps in measles virus

New Publication "Galaxy single-cell & spatial omics community update: Navigating new frontiers in 2025"

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.

Events

Oct 28 - Oct 30Science Gateways 2025

Join Science Gateways 2025 to explore portal technologies accelerating scientific discovery.

Nov 5 - Nov 8Genome Informatics

Join the CSHL Genome Informatics conference (#gi2025) on computational genomics.

Dec 3Introduction to Galaxy, the Open-Source Platform for FAIR Data Analysis (in German)

Are you new to e-science? Do you want to learn ways to analyse your material with digital tools from your browser without any programming skills? Do you want to get an idea of research data management? Register for our introduction at the HeFDI Data School to find out more