How to use Galaxy

How to cite Galaxy

Citing Galaxy

If you use Galaxy@Pasteur please cite doi:10.7490/f1000research.1114334.1

Cluster Load

test

For pasteur users:

  • Instructions on how to import big data here.
  • Galaxy Initiation slides are available here.
  • If you need a new tool or a new genome index for an existing tool (bwa, blast, star...), send an email to Pasteur_galaxy_support.

Warning! When xml are updated, workflows using them must be adapted.

News

From Plume to Bloom: Data Terra and Galaxy illuminated extreme event observation at EOSC Symposium 2025

Data Terra, the EOSC thematic node for the environment, demonstrated how the Galaxy platform accelerates environmental research through interoperable, FAIR data workflows within the EOSC Federation. From satellite plumes to ecosystem blooms.

EOSC Node Poland at EOSC Symposium 2025: Galaxy and Pulsar in action

At the EOSC Symposium 2025, the Polish EOSC Node demonstrated a complete FAIR research workflow powered by Galaxy and PLGrid’s Pulsar integrating data analysis, execution, and provenance tracking through Onedata. The presentation video and full details are available via the EOSC Node - Poland.

One framework, one workflow, many communities: Freiburg Galaxy team at EOSC Symposium 2025

Galaxy showed how 'one framework, one workflow, many communities' can run cross-disciplinary imaging analyses on the emerging EOSC Federation. Here is what we presented, with slides and video.

Galaxy at Genome Informatics 2025

Galaxy was in full force at Genome Informatics 2025, presenting cutting-edge work on scalable analysis, interactive workflows, and high-quality genome curation.

European Galaxy Days 2025 recordings now online

European Galaxy Days 2025 might be over, but the talks aren’t. Explore our new playlist featuring highlights from EGD2025

Events

Nov 25 - Nov 27Galaxy Ecology training and collabroation fest

As colleagues from CCAMLR / Antarctica conservation from Belgium are coming to Concarneau marine station to work on Galaxy Ecology use in their projects, we propose to create an open event, where colleagues from CCAMLR / Antarctica conservation from UK, New Zealand and others are interested to participate remotely, so people wanted to learn how to use and contribute to Galaxy Ecology European Platform during these 3 days.

Nov 26How can I analyse my texts, media, and data in the humanities and social sciences?

You want to analyse your media, text or data digitally, but do not know how? You only have a laptop but no programming skills or money for expensive programs? Do you want to consider good research data management, but do not know how? Galaxy is here for you!
This coffee lecture hosted by FDM Thüringen gives you a quick overview of how you can use the open source platform Galaxy (usegalaxy.eu) for your research

Dec 3Introduction to Galaxy, the Open-Source Platform for FAIR Data Analysis (in German)

Are you new to e-science? Do you want to learn ways to analyse your material with digital tools from your browser without any programming skills? Do you want to get an idea of research data management? Register for our introduction at the HeFDI Data School to find out more