How to use Galaxy

How to cite Galaxy

Citing Galaxy

If you use Galaxy@Pasteur please cite doi:10.7490/f1000research.1114334.1

Cluster Load

test

For pasteur users:

  • Instructions on how to import big data here.
  • Galaxy Initiation slides are available here.
  • If you need a new tool or a new genome index for an existing tool (bwa, blast, star...), send an email to Pasteur_galaxy_support.

Warning! When xml are updated, workflows using them must be adapted.

News

Galaxy Newsletter December 2025

From celebrating 20 years of Galaxy to highlighting this year’s releases, training milestones, and research breakthroughs, this final newsletter of 2025 reflects on how far the community has come and looks ahead to what’s next.

The Galaxy 25.1 Release is Live!

Galaxy 25.1 brings a modern card-based history interface with advanced keyboard navigation, powerful Sample Sheets for complex workflow inputs, an enhanced Tool Discovery view with EDAM ontology integration, the new Galaxy Charts visualization framework featuring IGV.js genome browser, a dedicated Recent Exports & Downloads page, visual indicators for short-term storage expiration, secure tool credentials and authentication management, workflow editor search capabilities, a redesigned User Preferences interface, and much more!

Using Claude AI for Literature Searches

LLMs for literature search produce 'interesting' results: It is almost useful

DataPLANT Presented Cloud Architecture and ARC RO-Crates at the 1st Open Access Workshop held in Göttingen

Freiburg Galaxy team recently joined experts in Göttingen for the 1st Open Architecture Workshop to help shape the future technical foundations of the National Research Data Infrastructure (NFDI). The team presented their cloud-oriented architecture and shared critical insights from the PLANT DataHUB regarding scalable storage and the "Software as a Service" approach. Read the full report to discover how collaborative efforts and common building blocks, such as ARC RO-crates, are driving the development of a robust and interoperable data ecosystem.

Training Infrastructure Feedback from Hans-Rudolf Hotz and Lucille Delisle

Teaching about galaxy and its workflow capabilities.

Events

Jan 9 - Jan 14PAG 33 Plant and Animal Genome Conference

Join PAG 33 to explore breakthroughs in plant and animal genomics and bioinformatics.

Mar 9 - Mar 13Workshop on high-throughput sequencing data analysis with Galaxy

This course introduces scientists to the data analysis platform Galaxy

May 4 - May 8European Geosciences Union (EGU) 2026

A Data Terra session to the European Geoscience Union

Jun 22 - Jun 272026 Galaxy Community Conference (GCC2026)

The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.

Jul 12 - Jul 16Intelligent Systems for Molecular Biology (ISMB) 2026

Join ISMB 2026 in Washington, DC, and celebrate over 30 years of advancing computational biology!