UseGalaxy.eu Tool Updates for 2019-11-10

November 10, 2019

On 2019-11-10, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #158

Statistics

create_tool_recommendation_model was updated to 12764915e1c5
create_tool_recommendation_model was updated to 9bf25dbe00ad
keras_batch_models was updated to 0a7f2b9e1fcb
keras_batch_models was updated to 7f6079deac6f
keras_batch_models was updated to ed4d31f47d65
keras_model_builder was updated to 1f0c955fabc7
keras_model_builder was updated to 4bd0bd2add7f
keras_model_builder was updated to 5f39cff2a372
keras_model_config was updated to 0fd7d8e90e2a
keras_model_config was updated to bedbda03c573
keras_model_config was updated to e474e701d58b
ml_visualization_ex was updated to 09efff9a5765
ml_visualization_ex was updated to dd13740e8fdc
ml_visualization_ex was updated to f96efab83b65
model_prediction was updated to af7ed4d45619
model_prediction was updated to ce00f1cccb03
model_prediction was updated to fb1fa391189e
scipy_sparse was updated to 102c8bae2e9c
scipy_sparse was updated to 1658dff33c46
scipy_sparse was updated to 2a32d1d9c8da
scipy_sparse was updated to 648b81bca7c5
scipy_sparse was updated to b9ed7b774ba3
scipy_sparse was updated to eb3091b4ee4b
sklearn_build_pipeline was updated to 019bd8289224
sklearn_build_pipeline was updated to 653be9c354ec
sklearn_build_pipeline was updated to 6d056a1b2249
sklearn_build_pipeline was updated to 7388ffedf12c
sklearn_build_pipeline was updated to 913ee94945f3
sklearn_build_pipeline was updated to 9ddacd0b8c8b
sklearn_clf_metrics was updated to 5621f2be9fbc
sklearn_clf_metrics was updated to 5a21a631d2eb
sklearn_clf_metrics was updated to 68afcd163b3d
sklearn_clf_metrics was updated to 9bf11bbeccc3
sklearn_clf_metrics was updated to ae69f6918abe
sklearn_clf_metrics was updated to e8ded63c3fa8
sklearn_data_preprocess was updated to 4952fe39b61d
sklearn_data_preprocess was updated to 4fc54bac4254
sklearn_data_preprocess was updated to 50b3e080cef0
sklearn_data_preprocess was updated to 66df2aa6cd6b
sklearn_data_preprocess was updated to 9ac0b78c6b6d
sklearn_data_preprocess was updated to 9e43ee712723
sklearn_discriminant_classifier was updated to 1d2bcebc8678
sklearn_discriminant_classifier was updated to 3e2921875c58
sklearn_discriminant_classifier was updated to 5552eda109bd
sklearn_discriminant_classifier was updated to 7696d389675c
sklearn_discriminant_classifier was updated to 8e49f26b14d3
sklearn_discriminant_classifier was updated to 95d0f81e46e8
sklearn_ensemble was updated to 172365bc2b5f
sklearn_ensemble was updated to 360330a867f0
sklearn_ensemble was updated to 47d4baa183b2
sklearn_ensemble was updated to d868914bce73
sklearn_ensemble was updated to e94395c672bd
sklearn_ensemble was updated to f4d8a82e167c
sklearn_estimator_attributes was updated to 7a64b9f39a46
sklearn_estimator_attributes was updated to 84ddbf61e107
sklearn_estimator_attributes was updated to 867caa39eaa4
sklearn_estimator_attributes was updated to f4a7c3aa1e10
sklearn_feature_selection was updated to 231e9a9849e8
sklearn_feature_selection was updated to 8a307b946c58
sklearn_feature_selection was updated to c2cd3219543a
sklearn_feature_selection was updated to ec25331946b8
sklearn_feature_selection was updated to fe47a06943fb
sklearn_generalized_linear was updated to 63417d0acc72
sklearn_generalized_linear was updated to 6cf4b82c72bc
sklearn_generalized_linear was updated to a9474cdda506
sklearn_generalized_linear was updated to b628de0d101f
sklearn_generalized_linear was updated to bf32512b1418
sklearn_generalized_linear was updated to f12dc92b6699
sklearn_model_validation was updated to 492d34a75de6
sklearn_model_validation was updated to 5895fe0b8bde
sklearn_model_validation was updated to 60b8a683ba99
sklearn_model_validation was updated to 887e0aaa482e
sklearn_model_validation was updated to 95b04e086576
sklearn_model_validation was updated to cf9aa11b91c8
sklearn_nn_classifier was updated to 23fb598a09d7
sklearn_nn_classifier was updated to 9871a634540f
sklearn_nn_classifier was updated to c030e4bb1b39
sklearn_nn_classifier was updated to e9ba818e7877
sklearn_nn_classifier was updated to fa2d8618bab0
sklearn_nn_classifier was updated to fbc38059bb8f
sklearn_numeric_clustering was updated to 27903ce9b4be
sklearn_numeric_clustering was updated to 2d7c60aa6c62
sklearn_numeric_clustering was updated to 6edcaa8dbb9f
sklearn_numeric_clustering was updated to 9ff214ce6ec2
sklearn_numeric_clustering was updated to abb5a3f256e3
sklearn_numeric_clustering was updated to ff955d4fc5b1
sklearn_pairwise_metrics was updated to 1682b64aad9e
sklearn_pairwise_metrics was updated to 20b7295ae6e9
sklearn_pairwise_metrics was updated to 62945303e6bd
sklearn_pairwise_metrics was updated to 86020dbc8ef7
sklearn_pairwise_metrics was updated to a61375e306c1
sklearn_pairwise_metrics was updated to bd9481c0af38
sklearn_regression_metrics was updated to 146133e04fbc
sklearn_regression_metrics was updated to 203b2ade8097
sklearn_regression_metrics was updated to 3703b5796442
sklearn_regression_metrics was updated to 3badea963c3b
sklearn_regression_metrics was updated to 40ee30b5e456
sklearn_regression_metrics was updated to 64c87ceb6766
sklearn_sample_generator was updated to 0ba38603a0d6
sklearn_sample_generator was updated to 52ea044c667f
sklearn_sample_generator was updated to 6b14fe097541
sklearn_sample_generator was updated to 86a086d2bbed
sklearn_sample_generator was updated to 97b467e06354
sklearn_sample_generator was updated to db7eb7302fc9
sklearn_searchcv was updated to 103aaea17119
sklearn_searchcv was updated to 1c4a241bef5c
sklearn_searchcv was updated to 21d3e08b1a48
sklearn_searchcv was updated to 3d5b2491c62b
sklearn_searchcv was updated to 68753d45815f
sklearn_searchcv was updated to 907bb0418c9f
sklearn_stacking_ensemble_models was updated to 0e20520a63ee
sklearn_stacking_ensemble_models was updated to 22560cf810b8
sklearn_stacking_ensemble_models was updated to 6717e5cc4d05
sklearn_svm_classifier was updated to 1a9d5a8fff12
sklearn_svm_classifier was updated to 295c383c3282
sklearn_svm_classifier was updated to 73d2ef652879
sklearn_svm_classifier was updated to 7d7379dfef8b
sklearn_svm_classifier was updated to 9295c5f34630
sklearn_svm_classifier was updated to e1b37bdc5fbd
sklearn_train_test_eval was updated to 20bb2a45f922
sklearn_train_test_eval was updated to cc49634df38f
sklearn_train_test_eval was updated to e23cfe4be9d4
heatmap was updated to db1d80e89156
transformation was updated to d9e05021553c
iwtomics_loadandplot was updated to 0027f3287b34
iwtomics_loadandplot was updated to 8eb7dded0d52
iwtomics_loadandplot was updated to ee7dd07a530e
iwtomics_plotwithscale was updated to 25030f0d1154
iwtomics_plotwithscale was updated to 4bd560127b68
iwtomics_testandplot was updated to 800c7e974e3b
iwtomics_testandplot was updated to 926cdd3158ae

FASTA/FASTQ

fasta_filter_by_length was updated to 2fd6033d0e9c
fasta_filter_by_length was updated to c8cd0a03db49
fastq_combiner was updated to 56389130cb63
fastq_combiner was updated to b05e39b9c170
fastq_filter was updated to 06934412f56d
fastq_groomer was updated to 71e5fa25b8a2
fastq_groomer was updated to 8611b80a14d6
fastq_manipulation was updated to 4ac14b275aca
fastq_masker_by_quality was updated to eb592e9ec47a
fastq_paired_end_deinterlacer was updated to b7ce72b00e62
fastq_paired_end_interlacer was updated to 3e396e702cea
fastq_paired_end_joiner was updated to 09a2199cd356
fastq_paired_end_splitter was updated to 9bbe5b7ffa12
fastq_stats was updated to e2cf940128d5
fastq_to_tabular was updated to ccf4e1d1fcbe
fastq_trimmer was updated to 2d0d13b0b0f1
fastqc was updated to ddf5c37952ac
fastqtofasta was updated to 4844c1810c16
fastx_artifacts_filter was updated to dd3737e40dce
fastx_barcode_splitter was updated to 015dc921d814
fastx_renamer was updated to 3599f5451ee2
fastx_trimmer was updated to 547e8d00f11c
tabular_to_fastq was updated to b8cdc0507586
seqtk was updated to 288f7f69fe25

Picard

picard was updated to 2a17c789e0a5
picard was updated to 6f9c0884a3e7

Phylogenetics

gstf_preparation was updated to f4acbfe8d6fe
t_coffee was updated to 0a189243186d
t_coffee was updated to c67bd5acbae2

Get Data

ensembl_get_feature_info was updated to 234d7babf34b
ensembl_get_genetree was updated to 0602dcf02768
ensembl_get_sequences was updated to 3b686142e9c2
spocc_occ was updated to 724ad06de5a5
ebi_metagenomics_run_downloader was updated to e2e9fae080ad

Multiple Alignments

cdhit was updated to 93f25d52cfa5
mummer_mummer was updated to 26f2cc1cc1e9

Nanopore

nanopolish_eventalign was updated to 5c360c46eac7
nanopolish_eventalign was updated to bee42f615f28
nanopolish_methylation was updated to 07cf146e8964
nanopolish_methylation was updated to f9dadc362197
nanopolish_variants was updated to 639b3a5bb415
nanopolish_variants was updated to f1cb13497323
nanoplot was updated to db1eeffba23e

Quality Control

multiqc was updated to b2f1f75d49c4

Metabolomics

xcms_group was updated to 9e45e1c404a4
xcms_merge was updated to 47f9b1fd5ce6
xcms_summary was updated to 27e7da5f6848

Collection Operations

split_file_to_collection was updated to 2ddc36385d7a

SAM/BAM

bam_to_sam was updated to 88eedb4abea0
bam_to_sam was updated to f57df915aa10
bamtools_filter was updated to bd735cae4ce6
sam_to_bam was updated to b77f7b516b17
sam_to_bam was updated to cf1ffd88f895
sam_to_bam was updated to f7a0d41036c7
samtool_filter2 was updated to b7aa423007bf
samtools_calmd was updated to 3d873744df7e
samtools_calmd was updated to e65c2cd0964c
samtools_flagstat was updated to db17d5321bad
samtools_idxstats was updated to 811fc2d75ad4
samtools_phase was updated to b5c3b1856370
samtools_rmdup was updated to 586f9e1cdb2b
samtools_stats was updated to 145f6d74ff5e
samtools_stats was updated to 5a08c09b9311
ngsutils_bam_filter was updated to 49bf71fbc574
ngsutils_bam_filter was updated to aecfe10118ed
qualimap_multi_bamqc was updated to 16beb83e370c
samtools_fastx was updated to a8d69aee190e
samtools_fixmate was updated to bc0cc7bfbfe9
samtools_markdup was updated to 83b8e36e9cbe
samtools_merge was updated to 740ce0a18f0d

Assembly

disco was updated to 6d447ebb2bf4
quast was updated to 59db8ea8c845
quast was updated to f30d03867854
shovill was updated to 57d5928f456e
unicycler was updated to 2db911a4efc5
metaspades was updated to 01a241476407
metaspades was updated to 05c394313b1c

GraphClust

graphclust_postprocessing was updated to e080ebe95476

Mothur

mothur_align_check was updated to e24361e6dd15
mothur_align_seqs was updated to a9e49986bea7
mothur_amova was updated to a781ac710ec3
mothur_anosim was updated to 947036da99f2
mothur_bin_seqs was updated to c9181cf15a6b
mothur_chimera_bellerophon was updated to b6ddaa19dba3
mothur_chimera_ccode was updated to 6e2e58e07e0f
mothur_chimera_check was updated to c817602bbcbe
mothur_chimera_perseus was updated to 29412cc05a3d
mothur_chimera_pintail was updated to a98f92e8923d
mothur_chimera_slayer was updated to cc983edb4db0
mothur_chimera_uchime was updated to ac246f061fd5
mothur_chop_seqs was updated to 3eeb1a2b2ae4
mothur_classify_otu was updated to c384c39c9c27
mothur_classify_seqs was updated to 5da484e2c7a4
mothur_classify_tree was updated to 9046e85ccaf6
mothur_clearcut was updated to 7e5184c75727
mothur_cluster was updated to c31bcc652db3
mothur_cluster_classic was updated to 2825bfdfee39
mothur_cluster_fragments was updated to 836052d22684
mothur_cluster_split was updated to c697df7d7a48
mothur_collect_shared was updated to 818ec2fddea1
mothur_collect_single was updated to ba873a97b0ac
mothur_consensus_seqs was updated to b114aeea6c4c
mothur_cooccurrence was updated to 5076b26f99d0
mothur_corr_axes was updated to 0c76942a61e2
mothur_count_groups was updated to 7b7f375b9b8d
mothur_count_seqs was updated to 9cfefba79f40
mothur_create_database was updated to b6a0f2e80e5d
mothur_degap_seqs was updated to 104cea550c2f
mothur_deunique_seqs was updated to 77e034e33a66
mothur_deunique_tree was updated to 2b96ca0b44c0
mothur_dist_seqs was updated to dcbf475d7d60
mothur_dist_shared was updated to 3e2ca0c67e9d
mothur_fastq_info was updated to 3ce3974a0e0b
mothur_filter_seqs was updated to e71c69acde3f
mothur_filter_shared was updated to 38bb70251d7a
mothur_get_communitytype was updated to ad6d51c51be2
mothur_get_coremicrobiome was updated to 80b24979c575
mothur_get_dists was updated to 4d0f7df5a8f8
mothur_get_group was updated to 83700d313432
mothur_get_groups was updated to cfeef38a433e
mothur_get_label was updated to 78e5065b27bd
mothur_get_lineage was updated to d1abc038d4bd
mothur_get_mimarkspackage was updated to 49f2db40374d
mothur_get_otulabels was updated to b847275dfdf2
mothur_get_otulist was updated to a68c119c37c5
mothur_get_oturep was updated to 782220733828
mothur_get_otus was updated to 971ab18e74d7
mothur_get_rabund was updated to 08a740b388d8
mothur_get_relabund was updated to d53c7d63b940
mothur_get_sabund was updated to 0bc1dc0c6aad
mothur_get_seqs was updated to 32a95d4cd850
mothur_get_sharedseqs was updated to deb8f26d8d66
mothur_heatmap_bin was updated to a271eda55001
mothur_heatmap_sim was updated to 2f93c7bba6f8
mothur_homova was updated to 9a215084d776
mothur_indicator was updated to ba8150cff807
mothur_lefse was updated to c98e47f7b233
mothur_libshuff was updated to 7c46233bfa06
mothur_list_otulabels was updated to 72c4cd2b5b74
mothur_list_seqs was updated to 0ad4a88e6314
mothur_make_biom was updated to cfdfa41e01a4
mothur_make_contigs was updated to c3203178c41f
mothur_make_design was updated to 4b18c3d54bc6
mothur_make_fastq was updated to 25b9449a5f3d
mothur_make_fastq was updated to e9b12c5ad27f
mothur_make_group was updated to 63a75db03ecc
mothur_make_lefse was updated to 2da52b4bf3dc
mothur_make_shared was updated to f7a10f16aa99
mothur_make_sra was updated to afa357a7b58a
mothur_mantel was updated to 3179a29d3b70
mothur_merge_files was updated to 80e3857bf744
mothur_merge_groups was updated to 47d3c31340d7
mothur_merge_sfffiles was updated to 0778c4b6a300
mothur_merge_taxsummary was updated to a2dda99b6d79
mothur_metastats was updated to f50fa0018f6f
mothur_mimarks_attributes was updated to 7986e1c4bc23
mothur_nmds was updated to 555a89f14c55
mothur_normalize_shared was updated to 5a00f7d92dc2
mothur_otu_association was updated to 12af8c375bb8
mothur_otu_hierarchy was updated to abf3d41b7428
mothur_pairwise_seqs was updated to 39c7213ca279
mothur_parse_list was updated to 59906aed724a
mothur_parsimony was updated to da7f70ebfb4c
mothur_pca was updated to e3638c927d93
mothur_pcoa was updated to 1c1d69d94f7d
mothur_pcr_seqs was updated to 0ce27975e549
mothur_phylo_diversity was updated to e398beade8e7
mothur_phylotype was updated to 249cdeb3cdb1
mothur_pre_cluster was updated to baba9fff9dba
mothur_primer_design was updated to d6f7c58a89d0
mothur_rarefaction_shared was updated to 325ecaad64c0
mothur_rarefaction_single was updated to 5c2157147393
mothur_remove_dists was updated to f7dba43ea52c
mothur_remove_groups was updated to 2d5258c52be0
mothur_remove_lineage was updated to 380e75c0ae8e
mothur_remove_otulabels was updated to 2cbf56d15f4b
mothur_remove_otus was updated to 530698de365d
mothur_remove_rare was updated to da5fbab58754
mothur_remove_seqs was updated to 2fa446f85b18
mothur_remove_seqs was updated to 92eb629218e1
mothur_reverse_seqs was updated to db762c766b89
mothur_screen_seqs was updated to 595419d427b6
mothur_sens_spec was updated to 084dc4e8caae
mothur_seq_error was updated to bb53c2c29c23
mothur_sffinfo was updated to 387d9e58afc2
mothur_shhh_flows was updated to b6a88afacb17
mothur_shhh_seqs was updated to 151a711dec84
mothur_sort_seqs was updated to 2f6a9498447e
mothur_split_abund was updated to 3a364dd93195
mothur_split_groups was updated to 627cf4d36194
mothur_sub_sample was updated to 2986f7b01e74
mothur_summary_qual was updated to 315cf5ff78f9
mothur_summary_seqs was updated to d7ea2d0b4917
mothur_summary_shared was updated to 47370a4efc95
mothur_summary_single was updated to de4801f05e5e
mothur_summary_tax was updated to 4db7f1329d0e
mothur_tree_shared was updated to 73dd30cbca20
mothur_trim_flows was updated to 51da4c69105d
mothur_trim_seqs was updated to c49a6454726c
mothur_trim_seqs was updated to fc17c9a3c800
mothur_unifrac_unweighted was updated to 46ba42ec466b
mothur_unifrac_weighted was updated to 20bc6be9e1df
mothur_unique_seqs was updated to 8fce7ef726c8
mothur_venn was updated to 8df8d8b67b13

hca_sc_scanpy_tools

scanpy_compute_graph was updated to 6b2673e1f4c6
scanpy_find_cluster was updated to 455846afcc73
scanpy_find_markers was updated to c18f446dcfbf
scanpy_find_variable_genes was updated to 321f1b073cbc
scanpy_parameter_iterator was updated to 1a30a61effea
scanpy_parameter_iterator was updated to c6d3a3609a8a
scanpy_parameter_iterator was updated to ce09dd900257
scanpy_read_10x was updated to cf55e0e462da
scanpy_run_pca was updated to 8b4dae3748d3
scanpy_run_tsne was updated to 3589dfaef3f6
scanpy_run_umap was updated to c111d7d04f0b
scanpy_scale_data was updated to 4c73b070cbff

Mapping

bowtie2 was updated to a54de7e658f7
bwa was updated to 8d2a528a9513
rgrnastar was updated to 41929aa1e7f3
rgrnastar was updated to d82339e37e8e
rna_starsolo was updated to 61cb2042581a
star_fusion was updated to 0b44456754e2

Join, Subtract and Group

collection_column_join was updated to 58228a4d58fe

Graph/Display Data

plotly_ml_performance_plots was updated to 85da91bbdbfb
plotly_regression_performance_plots was updated to 389227fa1864
fasta_nucleotide_color_plot was updated to 0fba45ac3987
ggplot2_heatmap was updated to f44dc95928aa
ggplot2_heatmap was updated to fe8d4655ee10
ggplot2_histogram was updated to 1f0242e49a58
ggplot2_histogram was updated to 63a595b451d1
ggplot2_histogram was updated to f52035800250
ggplot2_pca was updated to bb6ec8e5387f
ggplot2_pca was updated to c21099566418
ggplot2_point was updated to 9a482995958c
ggplot2_violin was updated to 3a270cee1239
ggplot2_violin was updated to 43778344b955
jbrowse was updated to 8f33c9fbc119
volcanoplot was updated to 6d532d760950

Imaging

coordinates_of_roi was updated to 0d30ffea8874
coordinates_of_roi was updated to 24d9bd16c953
imagecoordinates_flipaxis was updated to 5a210baa2ff1
landmark_registration was updated to a71239f3543a
overlay_segmentation_mask was updated to 63b2a10b1001
visceral_evaluatesegmentation was updated to d098aed00229

RNA Analysis

alevin was updated to 908a8d400fa2
alevin was updated to e53f19161c59
salmon was updated to 6b0ba6de1424
salmonquantmerge was updated to 992c077f6e41
deseq2 was updated to 9a616afdbda5
deseq2 was updated to a416957ee305
deseq2 was updated to e5c8afac22a7
edger was updated to 555659de7321
heinz was updated to e41ec5af7472
migmap was updated to 6ad9d48a512e
qualimap_counts was updated to e020be4f281b
slamdunk was updated to fe3fe68b09a7
trinity_abundance_estimates_to_matrix was updated to cdde9062b49c
trinity_contig_exn50_statistic was updated to 03ca5ddc37a9
trinity_filter_low_expr_transcripts was updated to b10270739c1b
trinity_run_de_analysis was updated to fd588e138aa6
paralyzer was updated to 4dbe81be8b81

Annotation

abricate was updated to 4efdca267d51
annotatemyids was updated to 9ab35a2245ce
annotatemyids was updated to b467a89be0c6
exonerate was updated to f48ed38dfddf
goenrichment was updated to 5ace5c7d1a86
goseq was updated to ade933eff007
goslimmer was updated to de3e053bd6a5
roary was updated to e02e9af2743f
transtermhp was updated to 1a1ec22a7e28
sortmerna was updated to 185effcdfb68
sortmerna was updated to 1eafcc450052

Single-cell

raceid_clustering was updated to 528a43b1cbcf
raceid_inspectclusters was updated to 0fa80752a314
raceid_inspectclusters was updated to 106718959281
raceid_inspecttrajectory was updated to 4164c0da0a5d
raceid_inspecttrajectory was updated to 5156383d3a5d
raceid_trajectory was updated to 87de515af823
raceid_trajectory was updated to da7ff78fe296

Evolution

codeml was updated to 961a712f9743
iqtree was updated to 288db50d1fb9
structure was updated to 64e681a1cad5

Operate on Genomic Intervals

bedtools was updated to 87ee588b3d45

Filter and Sort

gffcompare was updated to 0f710191a66d

Motif Tools

meme_fimo was updated to 4eb02864e5df
meme_psp_gen was updated to a0fa4efeeee3

Data Managers

data_manager_qiime_database_downloader was updated to 9e86c09a6cae
data_manager_salmon_index_builder was updated to 6b0f2bdcc1b7

ChemicalToolBox

autodock_vina_prepare_box was updated to 4f7c5cad3377
autodock_vina_prepare_box was updated to 761762031eee
autodock_vina_prepare_ligand was updated to 965badb456d4
ctb_rdkit_descriptors was updated to 6674260c1459
mordred was updated to ea68b86303e2
openbabel_addh was updated to d2e6d682bcd0
openbabel_change_title was updated to 9c15e92bed39
openbabel_compound_convert was updated to a9df9aae60bb
openbabel_filter was updated to 0e382252d23d
openbabel_genprop was updated to aafffb37d168
openbabel_obgrep was updated to 99517f9b780d
openbabel_remduplicates was updated to 65254472e5b4
openbabel_remions was updated to 04da8dc033e1
openbabel_remove_protonation_state was updated to 00263ca6ffb8
openbabel_remsmall was updated to c8d8caa9a54d
openbabel_spectrophore_search was updated to f93f3e01abe8
openbabel_subsearch was updated to ab2b9d87b067
openbabel_svg_depiction was updated to 672b3365ddbc
osra was updated to 0916781bc971
bio3d_dccm was updated to 18440ff54f63
bio3d_pca was updated to 994c509873db
bio3d_pca_visualize was updated to 7ac6900f4790
bio3d_rmsd was updated to f871c9a8cb7c
bio3d_rmsf was updated to 4354d92dc1aa
gmx_em was updated to 6d9a9ab96195
gmx_md was updated to d97433b7d482
gmx_merge_topology_files was updated to 33ed3c26b8c2
gmx_npt was updated to 93e39b0321c7
gmx_nvt was updated to f425c1453662
gmx_setup was updated to acc9922f3eab
md_converter was updated to b61cbdf78765
packmol was updated to 0b8a0ce446f5

EMBOSS

emboss_5 was updated to 8992d258e42f

Text Manipulation

split_file_on_column was updated to 90b52d8d6f2c
tables_arithmetic_operations was updated to 82fa5062d611
gff3_rebase was updated to e54940ea270c
gff3_rebase was updated to ea35a85b941d
table_compute was updated to 02c3e335a695

FASTQ Quality Control

multiqc was updated to 161f4383df15

Convert Formats

graphicsmagick_image_convert was updated to 627e8b38f24f
graphicsmagick_image_convert was updated to c01226f0d828
graphicsmagick_image_convert was updated to e88f1111d9e7
uniprot_rest_interface was updated to 48522382b6a4
msconvert was updated to cc5ccfa8ee28
bam_to_scidx was updated to 408520e1ae1a
bam_to_scidx was updated to b737f6d83f48
crossmap_bam was updated to 5051467dc96a
crossmap_bed was updated to e6c68525e9ee
crossmap_gff was updated to e80720e27001
crossmap_vcf was updated to 9d61d74f03a4
crossmap_wig was updated to 3cb69f2ecea2
gtftobed12 was updated to 75a14cc16d4d
resize_coordinate_window was updated to 541f300f322d
resize_coordinate_window was updated to 9ba78e8985dc
ucsc_twobittofa was updated to d025a40bbff1

Proteomics

cardinal_classification was updated to 585ef27873c9
cardinal_combine was updated to fe5a1d487f32
cardinal_data_exporter was updated to d94770c22f13
cardinal_filtering was updated to 4b5513e25902
cardinal_mz_images was updated to 27a4c660bbca
cardinal_mz_images was updated to 773a24b240e1
cardinal_preprocessing was updated to f172efe92629
cardinal_quality_report was updated to 16556ca0196b
cardinal_segmentations was updated to 09b638ceee45
cardinal_spectra_plots was updated to 58c4aef16eb0
hardklor was updated to c5b3b7eafd46
maxquant was updated to 666f3453a99d
maxquant_mqpar was updated to 256cc0e17454
maxquant_mqpar was updated to 26693e21c3c8
msgfplus was updated to ee56530a559f
myrimatch was updated to a039a8d4c7e0
megahit_contig2fastg was updated to b910d0cbc00b
megahit_contig2fastg was updated to ed22349139ee

Metagenomic Analysis

interproscan5 was updated to 82547f0d3a29
dada2_assigntaxonomyaddspecies was updated to 18517edb4733
dada2_dada was updated to ce4aec98949d
dada2_filterandtrim was updated to cc41546adf56
dada2_learnerrors was updated to fd892c845981
dada2_makesequencetable was updated to 6e0946238688
dada2_mergepairs was updated to 805daed21ef3
dada2_plotcomplexity was updated to ab2030f217a9
dada2_plotqualityprofile was updated to 371afe17d247
dada2_removebimeradenovo was updated to 1937c2b4da7a
dada2_seqcounts was updated to d26cea4b4cc4

Gemini

gemini_actionable_mutations was updated to 3630a6e624d4
gemini_amend was updated to 4bd4870ecd33
gemini_annotate was updated to 8da05bf2b1d1
gemini_burden was updated to fd6052cdc2c3
gemini_db_info was updated to 124c5faef773
gemini_dump was updated to c3da7c5f2141
gemini_fusions was updated to 37f9901b674d
gemini_fusions was updated to 5ff5586b4681
gemini_fusions was updated to 8295781a3c27
gemini_gene_wise was updated to 0db31ae5295e
gemini_gene_wise was updated to 99d6e7b1b7f1
gemini_gene_wise was updated to bc66ebfd4159
gemini_interactions was updated to 2ddee6cd4a5a
gemini_interactions was updated to 4234e3248f4d
gemini_interactions was updated to 527c8e4a356f
gemini_load was updated to 269c40fdcccb
gemini_load was updated to 993ccb45326b
gemini_load was updated to 9f74d7b0704a
gemini_lof_sieve was updated to 9511c648d044
gemini_lof_sieve was updated to be7ac09bc2fa
gemini_lof_sieve was updated to e1920f41a1ca
gemini_mendel_errors was updated to 009a8d614a83
gemini_pathways was updated to 2bce41988d8e
gemini_pathways was updated to 42d3c5077378
gemini_pathways was updated to 66bc68095012
gemini_qc was updated to 5d18dcbf2a0c
gemini_qc was updated to 9872131c2377
gemini_qc was updated to a875f940d8fd
gemini_query was updated to 18f459744a97
gemini_query was updated to 5596c2dc4218
gemini_query was updated to ab195e756e5e
gemini_recessive_and_dominant was updated to a78bfd5264b1
gemini_region was updated to 0239bb5482c1
gemini_roh was updated to 91b4db3e6df4
gemini_roh was updated to 932a57d22888
gemini_roh was updated to e7ad2a721c4b
gemini_set_somatic was updated to 230c975e7759
gemini_set_somatic was updated to 5fd4a5f9ee31
gemini_set_somatic was updated to ef9991a4a9a7
gemini_stats was updated to 4de57a28e609
gemini_stats was updated to a0ee6874a23b
gemini_stats was updated to ac761838cdaf
gemini_windower was updated to 8f04952b8882

Climate Analysis

cds_essential_variability was updated to b9d9fe0c2ce7

Variant Calling

vcffilter was updated to 9442e22779ca
vcffilter was updated to eae7c08ebb6f
bcftools_call was updated to 01fd33bc2e75
bcftools_call was updated to 3296c3680d96
bcftools_call was updated to 4fa18320d29b
bcftools_call was updated to b03984136ce4
bcftools_cnv was updated to 635532ff1ac9
bcftools_cnv was updated to 86737d0f7fab
bcftools_consensus was updated to a87ae767b01d
bcftools_consensus was updated to c82130967bd2
bcftools_consensus was updated to f867422772d6
bcftools_csq was updated to 33df4e68959b
bcftools_csq was updated to fa67bc6d3b41
bcftools_norm was updated to 93bdd3bf5743
bcftools_norm was updated to da6fc9f4a367
bcftools_plugin_color_chrs was updated to 05928e15da21
bcftools_plugin_color_chrs was updated to 87aa2e0a126e
bcftools_plugin_frameshifts was updated to 77877eec9e8b
bcftools_plugin_frameshifts was updated to a1c4d50c97e0
snippy was updated to 4df82423ba61
snippy was updated to 9bccc8404a3c
snpeff was updated to 36dc3690a82c
snpeff was updated to 479c4f2f4826
snpeff was updated to 8f92c2b26e6d
varscan_copynumber was updated to 0bc56f894766
varscan_copynumber was updated to 192bd5b78300
varscan_copynumber was updated to c24910ad5441
varscan_copynumber was updated to e814a042315f
varscan_mpileup was updated to 1e667badbe87
varscan_mpileup was updated to 45288fb1f3f5
varscan_mpileup was updated to 7c5e867820cf
varscan_mpileup was updated to d7e6c347538d
varscan_mpileup was updated to e3f170cc4f95

NCBI Blast

taxonomy_krona_chart was updated to 020b3087d0b7
kraken2 was updated to d4bb87ca916d
kraken_taxonomy_report was updated to 528a1d91b066
kraken_taxonomy_report was updated to b97694b21bc3

RAD-seq

stacks_assembleperead was updated to b08cd32d03ad
stacks_assembleperead was updated to bc108981ca68
stacks_clonefilter was updated to a0a51078cb61
stacks_cstacks was updated to 5bd1418f4227
stacks_cstacks was updated to dab92afa0c98
stacks_cstacks was updated to ff1f282d731e
stacks_denovomap was updated to 2b1dd7ab69f7
stacks_genotypes was updated to 00f4a4e553ae
stacks_genotypes was updated to 5af94af9ec8f
stacks_procrad was updated to 57910d476be9
stacks_procrad was updated to 8fe258d72ff3
stacks_pstacks was updated to 7ebc7d229deb
stacks_pstacks was updated to ede5223bc7f1
stacks_refmap was updated to 4ee074ca88fb
stacks_refmap was updated to 7c42e6768c41
stacks_rxstacks was updated to 2360d8cf42f7
stacks_rxstacks was updated to 9d0ac63dcfcd
stacks_sstacks was updated to 95e37a28704b
stacks_sstacks was updated to e38d181d4e72
stacks_stats was updated to 3c4c922a4fb0
stacks_ustacks was updated to b6de94f2edc0
stacks_ustacks was updated to e5c97f09fe06